IL_9P72_123

3D structure

PDB id

9P72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9P72|1|L5|A2M|3785, 9P72|1|L5|C|3791, 9P72|1|L5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P72|1|L5|C|3781
9P72|1|L5|5MC|3782
9P72|1|L5|A|3783
9P72|1|L5|A|3784
9P72|1|L5|A2M|3785
9P72|1|L5|U|3786
9P72|1|L5|G|3787
9P72|1|L5|C|3788
9P72|1|L5|C|3789
9P72|1|L5|U|3790
9P72|1|L5|C|3791
9P72|1|L5|OMG|3792
*
9P72|1|L5|OMC|3808
9P72|1|L5|G|3809
9P72|1|L5|C|3810
9P72|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA