IL_9P72_141
3D structure
- PDB id
- 9P72 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human P-E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- (OMC)(PSU)C*G(PSU)G(A2M)G
- Length
- 8 nucleotides
- Bulged bases
- 9P72|1|L5|G|4522, 9P72|1|L5|A2M|4523
- QA status
- Modified nucleotides: OMC, PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9P72_141 not in the Motif Atlas
- Homologous match to IL_9PN5_103
- Geometric discrepancy: 0.0723
- The information below is about IL_9PN5_103
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30722.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
9P72|1|L5|OMC|4456
9P72|1|L5|PSU|4457
9P72|1|L5|C|4458
*
9P72|1|L5|G|4520
9P72|1|L5|PSU|4521
9P72|1|L5|G|4522
9P72|1|L5|A2M|4523
9P72|1|L5|G|4524
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LV
- 60S ribosomal protein L23
Coloring options: