IL_9P72_217

3D structure

PDB id

9P72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGCCAG*CGG(OMU)AAUUC

Length

16 nucleotides

Bulged bases

9P72|1|S2|A|628, 9P72|1|S2|U|630, 9P72|1|S2|U|631

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P72|1|S2|G|611
9P72|1|S2|U|612
9P72|1|S2|G|613
9P72|1|S2|C|614
9P72|1|S2|C|615
9P72|1|S2|A|616
9P72|1|S2|G|617
*
9P72|1|S2|C|624
9P72|1|S2|G|625
9P72|1|S2|G|626
9P72|1|S2|OMU|627
9P72|1|S2|A|628
9P72|1|S2|A|629
9P72|1|S2|U|630
9P72|1|S2|U|631
9P72|1|S2|C|632

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SX

40S ribosomal protein S23

Chain Se

Small ribosomal subunit protein eS30