IL_9P78_225
3D structure
- PDB id
- 9P78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Hibernating rotate 3 with E-site tRNA state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAC*GUUU
- Length
- 7 nucleotides
- Bulged bases
- 9P78|1|S2|U|1016
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9P78_225 not in the Motif Atlas
- Homologous match to IL_9PN5_183
- Geometric discrepancy: 0.1294
- The information below is about IL_9PN5_183
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.7
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 240
Unit IDs
9P78|1|S2|G|925
9P78|1|S2|A|926
9P78|1|S2|C|927
*
9P78|1|S2|G|1014
9P78|1|S2|U|1015
9P78|1|S2|U|1016
9P78|1|S2|U|1017
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain Lc
- 60S ribosomal protein L30
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain Sb
- Small ribosomal subunit protein eS27
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