IL_9P79_078

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9P79|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P79_078 not in the Motif Atlas

Homologous match to IL_8GLP_082

Geometric discrepancy: 0.2144

The information below is about IL_8GLP_082

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.4

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

5

Unit IDs

9P79|1|L5|U|1957
9P79|1|L5|A|1958
9P79|1|L5|U|1959
9P79|1|L5|A|1960
9P79|1|L5|G|1961
9P79|1|L5|A|1962
9P79|1|L5|C|1963
9P79|1|L5|A|1964
9P79|1|L5|G|1965
*
9P79|1|L5|C|2022
9P79|1|L5|C|2023
9P79|1|L5|G|2024
9P79|1|L5|A|2025
9P79|1|L5|A|2026

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lm

Large ribosomal subunit protein eL40

Chain Ls

60S acidic ribosomal protein P0