IL_9P79_198
3D structure
- PDB id
- 9P79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 9P79|1|S2|U|368, 9P79|1|S2|C|369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9P79_198 not in the Motif Atlas
- Homologous match to IL_9PN5_160
- Geometric discrepancy: 0.2726
- The information below is about IL_9PN5_160
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01372.4
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
9P79|1|S2|U|366
9P79|1|S2|U|367
9P79|1|S2|U|368
9P79|1|S2|C|369
9P79|1|S2|G|370
9P79|1|S2|A|371
*
9P79|1|S2|U|393
9P79|1|S2|G|394
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- 60S ribosomal protein L19
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
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