IL_9P79_227

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9P79|1|S2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|S2|G|952
9P79|1|S2|C|953
9P79|1|S2|U|954
9P79|1|S2|A|955
9P79|1|S2|G|956
*
9P79|1|S2|C|967
9P79|1|S2|U|968
9P79|1|S2|U|969
9P79|1|S2|G|970
9P79|1|S2|G|971
9P79|1|S2|A|972
9P79|1|S2|C|973
9P79|1|S2|C|974

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SB

40S ribosomal protein S3a

Chain SO

Small ribosomal subunit protein uS11