IL_9P79_238

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC(PSU)*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P79_238 not in the Motif Atlas

Homologous match to IL_9PN5_198

Geometric discrepancy: 0.128

The information below is about IL_9PN5_198

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9P79|1|S2|C|1230
9P79|1|S2|C|1231
9P79|1|S2|PSU|1232
*
9P79|1|S2|G|1526
9P79|1|S2|C|1527
9P79|1|S2|G|1528

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain SU

40S ribosomal protein S20