IL_9P7C_116
3D structure
- PDB id
- 9P7C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Hibernating class3 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CUGAAU*GCG
- Length
- 9 nucleotides
- Bulged bases
- 9P7C|1|L5|A|3712
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9P7C_116 not in the Motif Atlas
- Geometric match to IL_6DLR_002
- Geometric discrepancy: 0.3968
- The information below is about IL_6DLR_002
- Detailed Annotation
- 8-nt loop receptor
- Broad Annotation
- Loop-receptor motif
- Motif group
- IL_83497.1
- Basepair signature
- cWW-L-R-cSH-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
9P7C|1|L5|C|3708
9P7C|1|L5|U|3709
9P7C|1|L5|G|3710
9P7C|1|L5|A|3711
9P7C|1|L5|A|3712
9P7C|1|L5|U|3713
*
9P7C|1|L5|G|3740
9P7C|1|L5|C|3741
9P7C|1|L5|G|3742
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Et
- Transfer RNA; tRNA
- Chain LA
- 60S ribosomal protein L8
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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