IL_9P7D_221

3D structure

PDB id

9P7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class4 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

9P7D|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7D_221 not in the Motif Atlas

Homologous match to IL_9H3G_198

Geometric discrepancy: 0.1113

The information below is about IL_9H3G_198

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9P7D|1|S2|G|925
9P7D|1|S2|A|926
9P7D|1|S2|C|927
*
9P7D|1|S2|G|1014
9P7D|1|S2|U|1015
9P7D|1|S2|U|1016
9P7D|1|S2|U|1017

Current chains

Chain S2

18S rRNA [homo sapiens]

Nearby chains

Chain SN

40S ribosomal protein S13

Chain Sb

Small ribosomal subunit protein eS27