IL_9P7E_196

3D structure

PDB id

9P7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class5 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9P7E|1|S2|U|361, 9P7E|1|S2|C|399, 9P7E|1|S2|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7E|1|S2|U|359
9P7E|1|S2|A|360
9P7E|1|S2|U|361
9P7E|1|S2|C|362
9P7E|1|S2|A|363
9P7E|1|S2|A|364
*
9P7E|1|S2|U|396
9P7E|1|S2|G|397
9P7E|1|S2|A|398
9P7E|1|S2|C|399
9P7E|1|S2|C|400
9P7E|1|S2|A|401
9P7E|1|S2|C|402
9P7E|1|S2|G|403

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11

Chain SX

40S ribosomal protein S23