IL_9P7F_072

3D structure

PDB id

9P7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GUCU*AAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7F_072 not in the Motif Atlas

Geometric match to IL_4V9F_003

Geometric discrepancy: 0.3694

The information below is about IL_4V9F_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9P7F|1|L5|G|1753
9P7F|1|L5|U|1754
9P7F|1|L5|C|1755
9P7F|1|L5|U|1756
*
9P7F|1|L5|A|1775
9P7F|1|L5|A|1776
9P7F|1|L5|C|1777

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain At

Transfer RNA; tRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like