IL_9P7F_185

3D structure

PDB id

9P7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

G(PSU)UAUGGU*AACGUC

Length

14 nucleotides

Bulged bases

9P7F|1|S2|G|113, 9P7F|1|S2|G|114

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7F|1|S2|G|108
9P7F|1|S2|PSU|109
9P7F|1|S2|U|110
9P7F|1|S2|A|111
9P7F|1|S2|U|112
9P7F|1|S2|G|113
9P7F|1|S2|G|114
9P7F|1|S2|U|115
*
9P7F|1|S2|A|348
9P7F|1|S2|A|349
9P7F|1|S2|C|350
9P7F|1|S2|G|351
9P7F|1|S2|U|352
9P7F|1|S2|C|353

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11