IL_9P7G_027

3D structure

PDB id

9P7G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GUC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7G_027 not in the Motif Atlas

Geometric match to IL_9H3G_023

Geometric discrepancy: 0.3433

The information below is about IL_9H3G_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9P7G|1|L5|G|493
9P7G|1|L5|U|494
9P7G|1|L5|C|495
*
9P7G|1|L5|G|659
9P7G|1|L5|A|660
9P7G|1|L5|C|661

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LQ

60S ribosomal protein L18