IL_9P7G_050

3D structure

PDB id

9P7G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GC*GCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7G_050 not in the Motif Atlas

Geometric match to IL_7KGA_006

Geometric discrepancy: 0.3184

The information below is about IL_7KGA_006

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_57267.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

9P7G|1|L5|G|1404
9P7G|1|L5|C|1405
*
9P7G|1|L5|G|1412
9P7G|1|L5|C|1413
9P7G|1|L5|C|1414

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain La

60S ribosomal protein L27a

Chain Lb

Large ribosomal subunit protein eL29