IL_9P7G_139

3D structure

PDB id

9P7G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

(OMC)(PSU)C*G(PSU)G(A2M)G

Length

8 nucleotides

Bulged bases

9P7G|1|L5|G|4522, 9P7G|1|L5|A2M|4523

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7G_139 not in the Motif Atlas

Homologous match to IL_9PN5_103

Geometric discrepancy: 0.1204

The information below is about IL_9PN5_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30722.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9P7G|1|L5|OMC|4456
9P7G|1|L5|PSU|4457
9P7G|1|L5|C|4458
*
9P7G|1|L5|G|4520
9P7G|1|L5|PSU|4521
9P7G|1|L5|G|4522
9P7G|1|L5|A2M|4523
9P7G|1|L5|G|4524

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23