IL_9P7H_079

3D structure

PDB id

9P7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human eEF1A-A/T-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CGCCCGAU*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7H_079 not in the Motif Atlas

Homologous match to IL_8GLP_076

Geometric discrepancy: 0.1195

The information below is about IL_8GLP_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

14

Unit IDs

9P7H|1|L5|C|1911
9P7H|1|L5|G|1912
9P7H|1|L5|C|1913
9P7H|1|L5|C|1914
9P7H|1|L5|C|1915
9P7H|1|L5|G|1916
9P7H|1|L5|A|1917
9P7H|1|L5|U|1918
*
9P7H|1|L5|G|2064
9P7H|1|L5|G|2065

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a

Chain Lf

60S ribosomal protein L35a