IL_9P7H_181

3D structure

PDB id

9P7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human eEF1A-A/T-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

UCU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7H_181 not in the Motif Atlas

Homologous match to IL_9PN5_143

Geometric discrepancy: 0.1908

The information below is about IL_9PN5_143

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9P7H|1|S2|U|34
9P7H|1|S2|C|35
9P7H|1|S2|U|36
*
9P7H|1|S2|A|519
9P7H|1|S2|A|520
9P7H|1|S2|A|521

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SJ

40S ribosomal protein S9