IL_9P7H_262

3D structure

PDB id

9P7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human eEF1A-A/T-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9P7H|1|S2|C|1701, 9P7H|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7H_262 not in the Motif Atlas

Homologous match to IL_9PN5_220

Geometric discrepancy: 0.1128

The information below is about IL_9PN5_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

7

Unit IDs

9P7H|1|S2|C|1700
9P7H|1|S2|C|1701
9P7H|1|S2|G|1702
*
9P7H|1|S2|C|1833
9P7H|1|S2|A|1834
9P7H|1|S2|A|1835
9P7H|1|S2|G|1836

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain Pt

Transfer RNA; tRNA

Chain SO

Small ribosomal subunit protein uS11

Chain Sa

40S ribosomal protein S26