IL_9P7I_197

3D structure

PDB id

9P7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human eEF1A-A/T-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.69 Å

Loop

Sequence

GCUCCUCUCCCACUU*AUGCCGAC

Length

23 nucleotides

Bulged bases

9P7I|1|S2|C|131, 9P7I|1|S2|U|132, 9P7I|1|S2|C|133, 9P7I|1|S2|C|134, 9P7I|1|S2|U|135, 9P7I|1|S2|C|136, 9P7I|1|S2|U|137, 9P7I|1|S2|C|138, 9P7I|1|S2|C|139, 9P7I|1|S2|C|142, 9P7I|1|S2|U|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7I|1|S2|G|130
9P7I|1|S2|C|131
9P7I|1|S2|U|132
9P7I|1|S2|C|133
9P7I|1|S2|C|134
9P7I|1|S2|U|135
9P7I|1|S2|C|136
9P7I|1|S2|U|137
9P7I|1|S2|C|138
9P7I|1|S2|C|139
9P7I|1|S2|C|140
9P7I|1|S2|A|141
9P7I|1|S2|C|142
9P7I|1|S2|U|143
9P7I|1|S2|U|144
*
9P7I|1|S2|A|175
9P7I|1|S2|U|176
9P7I|1|S2|G|177
9P7I|1|S2|C|178
9P7I|1|S2|C|179
9P7I|1|S2|G|180
9P7I|1|S2|A|181
9P7I|1|S2|C|182

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain LW

Ribosomal protein L24

Chain SG

40S ribosomal protein S6