9P7I Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9P7I_004 | 1/L5/37:44 | No text annotation | ||
| HL_9P7I_005 | 1/L5/68:73 | No text annotation | ||
| HL_9P7I_006 | 1/L5/89:95 | No text annotation | ||
| HL_9P7I_008 | 1/L5/204:211 | No text annotation | ||
| HL_9P7I_009 | 1/L5/222:226 | No text annotation | ||
| HL_9P7I_010 | 1/L5/230:238 | No text annotation | ||
| HL_9P7I_011 | 1/L5/289:298 | No text annotation | ||
| HL_9P7I_012 | 1/L5/314:323 | No text annotation | ||
| HL_9P7I_013 | 1/L5/368:373 | No text annotation | ||
| HL_9P7I_014 | 1/L5/393:398 | No text annotation | ||
| HL_9P7I_017 | 1/L5/1170:1191 | No text annotation | ||
| HL_9P7I_019 | 1/L5/1317:1326 | No text annotation | ||
| HL_9P7I_020 | 1/L5/1364:1373 | No text annotation | ||
| HL_9P7I_021 | 1/L5/1389:1394 | No text annotation | ||
| HL_9P7I_024 | 1/L5/1480:1484 | No text annotation | ||
| HL_9P7I_025 | 1/L5/1561:1566 | No text annotation | ||
| HL_9P7I_026 | 1/L5/1593:1602 | No text annotation | ||
| HL_9P7I_027 | 1/L5/1627:1635 | No text annotation | ||
| HL_9P7I_028 | 1/L5/1675:1680 | No text annotation | ||
| HL_9P7I_030 | 1/L5/1816:1823 | No text annotation | ||
| HL_9P7I_031 | 1/L5/1864:1870 | No text annotation | ||
| HL_9P7I_032 | 1/L5/1886:1893 | No text annotation | ||
| HL_9P7I_036 | 1/L5/2257:2261 | No text annotation | ||
| HL_9P7I_037 | 1/L5/2317:2322 | No text annotation | ||
| HL_9P7I_038 | 1/L5/2376:2384 | No text annotation | ||
| HL_9P7I_039 | 1/L5/2420:2426 | No text annotation | ||
| HL_9P7I_040 | 1/L5/2458:2463 | No text annotation | ||
| HL_9P7I_041 | 1/L5/2469:2471 | No text annotation | ||
| HL_9P7I_043 | 1/L5/2523:2532 | No text annotation | ||
| HL_9P7I_045 | 1/L5/2578:2583 | No text annotation | ||
| HL_9P7I_046 | 1/L5/2624:2632 | No text annotation | ||
| HL_9P7I_047 | 1/L5/2664:2670 | No text annotation | ||
| HL_9P7I_049 | 1/L5/2738:2742 | No text annotation | ||
| HL_9P7I_050 | 1/L5/2792:2799 | No text annotation | ||
| HL_9P7I_051 | 1/L5/2810:2816 | No text annotation | ||
| HL_9P7I_052 | 1/L5/2872:2877 | No text annotation | ||
| HL_9P7I_055 | 1/L5/3614:3618 | No text annotation | ||
| HL_9P7I_056 | 1/L5/3639:3649 | No text annotation | ||
| HL_9P7I_057 | 1/L5/3668:3674 | No text annotation | ||
| HL_9P7I_058 | 1/L5/3724:3729 | No text annotation | ||
| HL_9P7I_059 | 1/L5/3757:3767 | No text annotation | ||
| HL_9P7I_060 | 1/L5/3796:3804 | No text annotation | ||
| HL_9P7I_061 | 1/L5/3873:3882 | No text annotation | ||
| HL_9P7I_065 | 1/L5/4193:4201 | No text annotation | ||
| HL_9P7I_066 | 1/L5/4210:4222 | No text annotation | ||
| HL_9P7I_067 | 1/L5/4250:4258 | No text annotation | ||
| HL_9P7I_068 | 1/L5/4270:4277 | No text annotation | ||
| HL_9P7I_069 | 1/L5/4301:4309 | No text annotation | ||
| HL_9P7I_070 | 1/L5/4321:4326 | No text annotation | ||
| HL_9P7I_071 | 1/L5/4352:4362 | No text annotation | ||
| HL_9P7I_072 | 1/L5/4417:4425 | No text annotation | ||
| HL_9P7I_073 | 1/L5/4474:4481 | No text annotation | ||
| HL_9P7I_074 | 1/L5/4497:4503 | No text annotation | ||
| HL_9P7I_075 | 1/L5/4540:4545 | No text annotation | ||
| HL_9P7I_076 | 1/L5/4603:4608 | No text annotation | ||
| HL_9P7I_077 | 1/L5/4646:4651 | No text annotation | ||
| HL_9P7I_078 | 1/L5/4688:4702 | No text annotation | ||
| HL_9P7I_080 | 1/L5/4907:4914 | No text annotation | ||
| HL_9P7I_081 | 1/L5/4975:4983 | No text annotation | ||
| HL_9P7I_083 | 1/L7/32:45 | No text annotation | geometric HL_8QYX_071 HL_01182.1 | |
| HL_9P7I_084 | 1/L7/36:41 | No text annotation | homologous HL_7A0S_069 HL_59381.2 | |
| HL_9P7I_085 | 1/L7/86:91 | GNRA | homologous HL_4V9F_072 HL_34789.4 | |
| HL_9P7I_086 | 1/L8/47:56 | No text annotation | ||
| HL_9P7I_087 | 1/L8/68:90 | No text annotation | ||
| HL_9P7I_088 | 1/L8/107:112 | No text annotation | ||
| HL_9P7I_090 | 1/Pt/12:23 | No text annotation | homologous HL_1F7U_001 HL_55043.2 | |
| HL_9P7I_091 | 1/Pt/31:39 | tRNA anticodon loop | homologous HL_4V9Q_214 HL_81376.3 | |
| HL_9P7I_093 | 1/S2/7:17 | No text annotation | ||
| HL_9P7I_095 | 1/S2/156:162 | No text annotation | ||
| HL_9P7I_097 | 1/S2/288:295 | No text annotation | ||
| HL_9P7I_099 | 1/S2/377:387 | No text annotation | ||
| HL_9P7I_100 | 1/S2/416:421 | No text annotation | ||
| HL_9P7I_101 | 1/S2/441:452 | No text annotation | ||
| HL_9P7I_102 | 1/S2/462:467 | No text annotation | ||
| HL_9P7I_103 | 1/S2/498:504 | No text annotation | ||
| HL_9P7I_106 | 1/S2/618:623 | No text annotation | ||
| HL_9P7I_108 | 1/S2/820:828 | No text annotation | ||
| HL_9P7I_111 | 1/S2/957:966 | No text annotation | ||
| HL_9P7I_112 | 1/S2/994:999 | No text annotation | ||
| HL_9P7I_113 | 1/S2/1054:1064 | No text annotation | ||
| HL_9P7I_115 | 1/S2/1141:1146 | No text annotation | ||
| HL_9P7I_116 | 1/S2/1178:1183 | No text annotation | ||
| HL_9P7I_117 | 1/S2/1245:1254 | No text annotation | ||
| HL_9P7I_118 | 1/S2/1295:1304 | No text annotation | ||
| HL_9P7I_119 | 1/S2/1353:1358 | No text annotation | ||
| HL_9P7I_120 | 1/S2/1366:1373 | No text annotation | ||
| HL_9P7I_124 | 1/S2/1614:1625 | No text annotation | ||
| HL_9P7I_125 | 1/S2/1658:1666 | No text annotation | ||
| HL_9P7I_126 | 1/S2/1756:1777 | No text annotation | ||
| HL_9P7I_127 | 1/S2/1847:1852 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9P7I_001 | No text annotation | ||
| HL_9P7I_002 | No text annotation | ||
| HL_9P7I_003 | T-loop with 2 stacked bulged bases | ||
| HL_9P7I_007 | No text annotation | ||
| HL_9P7I_015 | No text annotation | ||
| HL_9P7I_016 | No text annotation | ||
| HL_9P7I_018 | No text annotation | ||
| HL_9P7I_022 | No text annotation | ||
| HL_9P7I_023 | No text annotation | ||
| HL_9P7I_029 | No text annotation | ||
| HL_9P7I_033 | No text annotation | ||
| HL_9P7I_034 | No text annotation | ||
| HL_9P7I_035 | No text annotation | ||
| HL_9P7I_042 | No text annotation | ||
| HL_9P7I_044 | No text annotation | ||
| HL_9P7I_048 | No text annotation | ||
| HL_9P7I_053 | No text annotation | ||
| HL_9P7I_054 | No text annotation | ||
| HL_9P7I_062 | No text annotation | ||
| HL_9P7I_063 | No text annotation | ||
| HL_9P7I_064 | No text annotation | ||
| HL_9P7I_079 | No text annotation | ||
| HL_9P7I_082 | No text annotation | ||
| HL_9P7I_089 | No text annotation | ||
| HL_9P7I_092 | No text annotation | ||
| HL_9P7I_094 | No text annotation | ||
| HL_9P7I_096 | No text annotation | ||
| HL_9P7I_098 | No text annotation | ||
| HL_9P7I_104 | No text annotation | ||
| HL_9P7I_105 | No text annotation | ||
| HL_9P7I_107 | No text annotation | ||
| HL_9P7I_109 | No text annotation | ||
| HL_9P7I_110 | No text annotation | ||
| HL_9P7I_114 | No text annotation | ||
| HL_9P7I_121 | No text annotation | ||
| HL_9P7I_122 | No text annotation | ||
| HL_9P7I_123 | No text annotation | ||
| HL_9P7I_128 | No text annotation | ||
| HL_9P7I_129 | tRNA anticodon loop | ||
| HL_9P7I_130 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9P7I_002 | 1/L5/6:7, 1/L8/149:151 | No text annotation | ||
| IL_9P7I_003 | 1/L5/12:14, 1/L8/143:144 | No text annotation | ||
| IL_9P7I_004 | 1/L5/16:18, 1/L8/139:141 | No text annotation | ||
| IL_9P7I_005 | 1/L5/26:27, 1/L5/55:57 | No text annotation | ||
| IL_9P7I_006 | 1/L5/30:37, 1/L5/44:52 | No text annotation | ||
| IL_9P7I_007 | 1/L5/81:88, 1/L5/96:102 | No text annotation | ||
| IL_9P7I_008 | 1/L5/118:122, 1/L5/147:153 | No text annotation | ||
| IL_9P7I_009 | 1/L5/125:126, 1/L5/142:144 | No text annotation | ||
| IL_9P7I_014 | 1/L5/195:196, 1/L5/244:246 | No text annotation | ||
| IL_9P7I_015 | 1/L5/199:201, 1/L5/214:215 | No text annotation | ||
| IL_9P7I_016 | 1/L5/339:342, 1/L8/32:33 | No text annotation | ||
| IL_9P7I_017 | 1/L5/348:350, 1/L8/25:26 | No text annotation | ||
| IL_9P7I_018 | 1/L5/387:390, 1/L5/401:414 | No text annotation | ||
| IL_9P7I_019 | 1/L5/415:421, 1/L8/13:19 | No text annotation | ||
| IL_9P7I_020 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation | ||
| IL_9P7I_023 | 1/L5/462:464, 1/L5/691:693 | No text annotation | ||
| IL_9P7I_024 | 1/L5/466:472, 1/L5/682:689 | No text annotation | ||
| IL_9P7I_026 | 1/L5/487:488, 1/L5/665:669 | No text annotation | ||
| IL_9P7I_031 | 1/L5/508:510, 1/L5/649:650 | No text annotation | ||
| IL_9P7I_033 | 1/L5/709:710, 1/L5/1286:1288 | No text annotation | ||
| IL_9P7I_034 | 1/L5/723:724, 1/L5/942:945 | No text annotation | ||
| IL_9P7I_035 | 1/L5/727:731, 1/L5/938:939 | No text annotation | ||
| IL_9P7I_036 | 1/L5/732:735, 1/L5/928:937 | No text annotation | ||
| IL_9P7I_039 | 1/L5/745:752, 1/L5/911:919 | No text annotation | ||
| IL_9P7I_040 | 1/L5/1073:1074, 1/L5/1237:1239 | No text annotation | ||
| IL_9P7I_049 | 1/L5/1244:1245, 1/L5/1265:1267 | No text annotation | ||
| IL_9P7I_050 | 1/L5/1357:1360, 1/L5/1379:1382 | No text annotation | ||
| IL_9P7I_051 | 1/L5/1357:1361, 1/L5/1376:1382 | No text annotation | ||
| IL_9P7I_052 | 1/L5/1360:1361, 1/L5/1376:1379 | No text annotation | ||
| IL_9P7I_055 | 1/L5/1425:1429, 1/L5/1455:1460 | No text annotation | ||
| IL_9P7I_056 | 1/L5/1431:1434, 1/L5/1450:1453 | No text annotation | ||
| IL_9P7I_057 | 1/L5/1467:1468, 1/L5/1496:1498 | No text annotation | ||
| IL_9P7I_058 | 1/L5/1474:1476, 1/L5/1489:1490 | No text annotation | ||
| IL_9P7I_059 | 1/L5/1479:1480, 1/L5/1484:1486 | No text annotation | ||
| IL_9P7I_060 | 1/L5/1520:1522, 1/L5/1655:1657 | No text annotation | ||
| IL_9P7I_061 | 1/L5/1522:1526, 1/L5/1648:1655 | No text annotation | ||
| IL_9P7I_062 | 1/L5/1545:1546, 1/L5/1612:1614 | No text annotation | ||
| IL_9P7I_063 | 1/L5/1550:1551, 1/L5/1576:1578 | No text annotation | ||
| IL_9P7I_064 | 1/L5/1551:1555, 1/L5/1572:1576 | No text annotation | ||
| IL_9P7I_065 | 1/L5/1586:1589, 1/L5/1605:1607 | No text annotation | ||
| IL_9P7I_066 | 1/L5/1590:1592, 1/L5/1603:1604 | No text annotation | ||
| IL_9P7I_067 | 1/L5/1624:1626, 1/L5/1636:1640 | No text annotation | ||
| IL_9P7I_068 | 1/L5/1671:1673, 1/L5/1682:1684 | No text annotation | ||
| IL_9P7I_069 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation | ||
| IL_9P7I_070 | 1/L5/1694:1721, 1/L5/1841:1842 | No text annotation | ||
| IL_9P7I_071 | 1/L5/1723:1725, 1/L5/1838:1839 | No text annotation | ||
| IL_9P7I_072 | 1/L5/1732:1738, 1/L5/1790:1797 | No text annotation | ||
| IL_9P7I_073 | 1/L5/1739:1744, 1/L5/1786:1789 | No text annotation | ||
| IL_9P7I_074 | 1/L5/1746:1749, 1/L5/1781:1784 | No text annotation | ||
| IL_9P7I_075 | 1/L5/1749:1751, 1/L5/1779:1781 | No text annotation | ||
| IL_9P7I_076 | 1/L5/1753:1756, 1/L5/1775:1777 | No text annotation | ||
| IL_9P7I_077 | 1/L5/1814:1816, 1/L5/1823:1824 | No text annotation | ||
| IL_9P7I_078 | 1/L5/1858:1860, 1/L5/1874:1876 | No text annotation | ||
| IL_9P7I_080 | 1/L5/1905:1909, 1/L5/2067:2071 | No text annotation | ||
| IL_9P7I_081 | 1/L5/1911:1918, 1/L5/2064:2065 | No text annotation | ||
| IL_9P7I_082 | 1/L5/1918:1920, 1/L5/2063:2064 | No text annotation | ||
| IL_9P7I_083 | 1/L5/1920:1922, 1/L5/2062:2063 | No text annotation | ||
| IL_9P7I_084 | 1/L5/1926:1933, 1/L5/2053:2058 | No text annotation | ||
| IL_9P7I_085 | 1/L5/1933:1944, 1/L5/2038:2053 | No text annotation | ||
| IL_9P7I_086 | 1/L5/1946:1948, 1/L5/2035:2036 | No text annotation | ||
| IL_9P7I_087 | 1/L5/1957:1965, 1/L5/2022:2026 | No text annotation | ||
| IL_9P7I_090 | 1/L5/2083:2085, 1/L5/2272:2273 | No text annotation | ||
| IL_9P7I_091 | 1/L5/2290:2292, 1/L5/2342:2345 | No text annotation | ||
| IL_9P7I_092 | 1/L5/2299:2301, 1/L5/2334:2335 | No text annotation | ||
| IL_9P7I_093 | 1/L5/2302:2309, 1/L5/2329:2333 | No text annotation | ||
| IL_9P7I_094 | 1/L5/2312:2314, 1/L5/2325:2326 | No text annotation | ||
| IL_9P7I_095 | 1/L5/2358:2364, 1/L5/3858:3863 | No text annotation | ||
| IL_9P7I_096 | 1/L5/2415:2419, 1/L5/2427:2429 | No text annotation | ||
| IL_9P7I_097 | 1/L5/2446:2450, 1/L5/2509:2514 | No text annotation | ||
| IL_9P7I_100 | 1/L5/2542:2547, 1/L5/2772:2774 | No text annotation | ||
| IL_9P7I_101 | 1/L5/2549:2550, 1/L5/2768:2770 | No text annotation | ||
| IL_9P7I_102 | 1/L5/2589:2593, 1/L5/2752:2756 | No text annotation | ||
| IL_9P7I_103 | 1/L5/2613:2614, 1/L5/2724:2726 | No text annotation | ||
| IL_9P7I_104 | 1/L5/2614:2615, 1/L5/2722:2724 | No text annotation | ||
| IL_9P7I_105 | 1/L5/2646:2648, 1/L5/2685:2688 | No text annotation | ||
| IL_9P7I_106 | 1/L5/2651:2653, 1/L5/2681:2682 | No text annotation | ||
| IL_9P7I_107 | 1/L5/2656:2662, 1/L5/2672:2678 | No text annotation | ||
| IL_9P7I_109 | 1/L5/2832:2838, 1/L5/3850:3853 | No text annotation | ||
| IL_9P7I_110 | 1/L5/2844:2846, 1/L5/3842:3844 | No text annotation | ||
| IL_9P7I_111 | 1/L5/2847:2850, 1/L5/3840:3841 | No text annotation | ||
| IL_9P7I_112 | 1/L5/2847:2855, 1/L5/3837:3841 | No text annotation | ||
| IL_9P7I_113 | 1/L5/2850:2855, 1/L5/3837:3840 | No text annotation | ||
| IL_9P7I_114 | 1/L5/2867:2872, 1/L5/2877:2883 | No text annotation | ||
| IL_9P7I_115 | 1/L5/2889:2891, 1/L5/3610:3612 | No text annotation | ||
| IL_9P7I_116 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation | ||
| IL_9P7I_117 | 1/L5/2901:2905, 1/L5/3589:3598 | No text annotation | ||
| IL_9P7I_119 | 1/L5/3632:3633, 1/L5/3827:3829 | No text annotation | ||
| IL_9P7I_120 | 1/L5/3660:3665, 1/L5/3677:3684 | No text annotation | ||
| IL_9P7I_121 | 1/L5/3700:3703, 1/L5/3749:3750 | No text annotation | ||
| IL_9P7I_122 | 1/L5/3704:3705, 1/L5/3745:3748 | No text annotation | ||
| IL_9P7I_123 | 1/L5/3708:3710, 1/L5/3741:3742 | No text annotation | ||
| IL_9P7I_124 | 1/L5/3708:3714, 1/L5/3739:3742 | No text annotation | ||
| IL_9P7I_125 | 1/L5/3710:3714, 1/L5/3739:3741 | No text annotation | ||
| IL_9P7I_126 | 1/L5/3715:3721, 1/L5/3732:3738 | No text annotation | ||
| IL_9P7I_127 | 1/L5/3780:3781, 1/L5/3811:3814 | No text annotation | ||
| IL_9P7I_128 | 1/L5/3781:3792, 1/L5/3808:3811 | No text annotation | ||
| IL_9P7I_129 | 1/L5/3895:3898, 1/L5/4563:4565 | No text annotation | ||
| IL_9P7I_130 | 1/L5/3900:3902, 1/L5/4558:4561 | No text annotation | ||
| IL_9P7I_131 | 1/L5/3913:3915, 1/L5/4388:4389 | No text annotation | ||
| IL_9P7I_132 | 1/L5/3916:3917, 1/L5/4384:4387 | No text annotation | ||
| IL_9P7I_133 | 1/L5/3927:3929, 1/L5/4181:4184 | No text annotation | ||
| IL_9P7I_134 | 1/L5/4082:4088, 1/L5/4161:4164 | No text annotation | ||
| IL_9P7I_135 | 1/L5/4191:4192, 1/L5/4202:4204 | No text annotation | ||
| IL_9P7I_136 | 1/L5/4243:4245, 1/L5/4263:4267 | No text annotation | ||
| IL_9P7I_137 | 1/L5/4291:4293, 1/L5/4317:4318 | No text annotation | ||
| IL_9P7I_138 | 1/L5/4295:4297, 1/L5/4314:4315 | No text annotation | ||
| IL_9P7I_139 | 1/L5/4297:4298, 1/L5/4312:4314 | No text annotation | ||
| IL_9P7I_140 | 1/L5/4347:4350, 1/L5/4364:4365 | No text annotation | ||
| IL_9P7I_141 | 1/L5/4400:4401, 1/L5/4442:4444 | No text annotation | ||
| IL_9P7I_142 | 1/L5/4401:4403, 1/L5/4440:4442 | No text annotation | ||
| IL_9P7I_143 | 1/L5/4403:4405, 1/L5/4439:4440 | No text annotation | ||
| IL_9P7I_144 | 1/L5/4405:4407, 1/L5/4435:4439 | No text annotation | ||
| IL_9P7I_145 | 1/L5/4412:4416, 1/L5/4426:4430 | No text annotation | ||
| IL_9P7I_146 | 1/L5/4453:4454, 1/L5/4526:4528 | No text annotation | ||
| IL_9P7I_147 | 1/L5/4456:4458, 1/L5/4520:4524 | No text annotation | ||
| IL_9P7I_148 | 1/L5/4458:4459, 1/L5/4517:4520 | No text annotation | ||
| IL_9P7I_149 | 1/L5/4466:4468, 1/L5/4489:4491 | No text annotation | ||
| IL_9P7I_150 | 1/L5/4466:4470, 1/L5/4485:4491 | No text annotation | ||
| IL_9P7I_151 | 1/L5/4468:4470, 1/L5/4485:4489 | No text annotation | ||
| IL_9P7I_152 | 1/L5/4495:4497, 1/L5/4503:4505 | No text annotation | ||
| IL_9P7I_153 | 1/L5/4537:4538, 1/L5/4547:4549 | No text annotation | ||
| IL_9P7I_154 | 1/L5/4580:4582, 1/L5/4721:4723 | No text annotation | ||
| IL_9P7I_155 | 1/L5/4582:4585, 1/L5/4717:4721 | No text annotation | ||
| IL_9P7I_156 | 1/L5/4590:4592, 1/L5/4618:4620 | No text annotation | ||
| IL_9P7I_157 | 1/L5/4596:4603, 1/L5/4608:4614 | No text annotation | ||
| IL_9P7I_158 | 1/L5/4624:4629, 1/L5/4669:4673 | No text annotation | ||
| IL_9P7I_159 | 1/L5/4632:4637, 1/L5/4662:4666 | No text annotation | ||
| IL_9P7I_160 | 1/L5/4638:4640, 1/L5/4659:4661 | No text annotation | ||
| IL_9P7I_161 | 1/L5/4641:4642, 1/L5/4655:4658 | No text annotation | ||
| IL_9P7I_162 | 1/L5/4680:4685, 1/L5/4705:4710 | No text annotation | ||
| IL_9P7I_166 | 1/L5/4756:4765, 1/L5/4869:4877 | No text annotation | ||
| IL_9P7I_168 | 1/L5/4885:4889, 1/L5/4930:4934 | No text annotation | ||
| IL_9P7I_169 | 1/L5/4891:4897, 1/L5/4923:4928 | No text annotation | ||
| IL_9P7I_171 | 1/L5/4972:4975, 1/L5/4983:4986 | No text annotation | ||
| IL_9P7I_172 | 1/L5/4992:4994, 1/L5/5057:5059 | No text annotation | ||
| IL_9P7I_173 | 1/L5/4996:4997, 1/L5/5053:5055 | No text annotation | ||
| IL_9P7I_174 | 1/L5/5000:5002, 1/L5/5045:5050 | No text annotation | ||
| IL_9P7I_175 | 1/L5/5003:5009, 1/L5/5039:5044 | No text annotation | ||
| IL_9P7I_176 | 1/L5/5012:5014, 1/L5/5035:5036 | No text annotation | ||
| IL_9P7I_177 | 1/L5/5014:5017, 1/L5/5032:5035 | No text annotation | ||
| IL_9P7I_178 | 1/L7/15:16, 1/L7/62:64 | No text annotation | geometric IL_8QYX_165 IL_05642.3 | |
| IL_9P7I_179 | 1/L7/21:27, 1/L7/52:57 | No text annotation | geometric IL_8QYX_166 IL_41504.1 | |
| IL_9P7I_180 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.2 | |
| IL_9P7I_181 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.12 | |
| IL_9P7I_182 | 1/L7/71:78, 1/L7/98:104 | No text annotation | geometric IL_8QYX_169 IL_62167.3 | |
| IL_9P7I_183 | 1/L7/79:81, 1/L7/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_71625.3 | |
| IL_9P7I_184 | 1/L7/82:85, 1/L7/92:94 | No text annotation | geometric IL_8QYX_171 IL_01003.4 | |
| IL_9P7I_185 | 1/L8/64:66, 1/L8/92:95 | No text annotation | ||
| IL_9P7I_187 | 1/S2/23:25, 1/S2/649:651 | No text annotation | ||
| IL_9P7I_188 | 1/S2/34:36, 1/S2/519:521 | No text annotation | ||
| IL_9P7I_190 | 1/S2/41:47, 1/S2/479:481 | No text annotation | ||
| IL_9P7I_191 | 1/S2/49:51, 1/S2/476:477 | No text annotation | ||
| IL_9P7I_192 | 1/S2/57:62, 1/S2/86:88 | No text annotation | ||
| IL_9P7I_193 | 1/S2/63:68, 1/S2/81:85 | No text annotation | ||
| IL_9P7I_194 | 1/S2/108:115, 1/S2/348:353 | No text annotation | ||
| IL_9P7I_196 | 1/S2/123:124, 1/S2/339:341 | No text annotation | ||
| IL_9P7I_197 | 1/S2/130:144, 1/S2/175:182 | No text annotation | ||
| IL_9P7I_198 | 1/S2/145:151, 1/S2/167:174 | No text annotation | ||
| IL_9P7I_199 | 1/S2/152:155, 1/S2/163:166 | No text annotation | ||
| IL_9P7I_201 | 1/S2/216:219, 1/S2/302:309 | No text annotation | ||
| IL_9P7I_202 | 1/S2/223:288, 1/S2/295:298 | No text annotation | ||
| IL_9P7I_203 | 1/S2/312:314, 1/S2/336:337 | No text annotation | ||
| IL_9P7I_205 | 1/S2/359:364, 1/S2/396:403 | No text annotation | ||
| IL_9P7I_206 | 1/S2/366:371, 1/S2/393:394 | No text annotation | ||
| IL_9P7I_207 | 1/S2/411:413, 1/S2/424:429 | No text annotation | ||
| IL_9P7I_208 | 1/S2/437:439, 1/S2/454:456 | No text annotation | ||
| IL_9P7I_209 | 1/S2/459:461, 1/S2/468:470 | No text annotation | ||
| IL_9P7I_210 | 1/S2/487:489, 1/S2/511:512 | No text annotation | ||
| IL_9P7I_212 | 1/S2/495:496, 1/S2/506:508 | No text annotation | ||
| IL_9P7I_217 | 1/S2/566:569, 1/S2/581:584 | No text annotation | ||
| IL_9P7I_218 | 1/S2/599:606, 1/S2/636:637 | No text annotation | ||
| IL_9P7I_219 | 1/S2/606:608, 1/S2/635:636 | No text annotation | ||
| IL_9P7I_220 | 1/S2/611:617, 1/S2/624:632 | No text annotation | ||
| IL_9P7I_221 | 1/S2/663:665, 1/S2/1162:1164 | No text annotation | ||
| IL_9P7I_222 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation | ||
| IL_9P7I_223 | 1/S2/673:675, 1/S2/1030:1032 | No text annotation | ||
| IL_9P7I_224 | 1/S2/676:680, 1/S2/1025:1029 | No text annotation | ||
| IL_9P7I_225 | 1/S2/802:803, 1/S2/860:863 | No text annotation | ||
| IL_9P7I_226 | 1/S2/805:807, 1/S2/856:858 | No text annotation | ||
| IL_9P7I_227 | 1/S2/807:815, 1/S2/849:856 | No text annotation | ||
| IL_9P7I_228 | 1/S2/874:876, 1/S2/910:912 | No text annotation | ||
| IL_9P7I_230 | 1/S2/922:923, 1/S2/1019:1022 | No text annotation | ||
| IL_9P7I_231 | 1/S2/925:926, 1/S2/1015:1017 | No text annotation | ||
| IL_9P7I_232 | 1/S2/928:931, 1/S2/1010:1013 | No text annotation | ||
| IL_9P7I_233 | 1/S2/931:935, 1/S2/1007:1010 | No text annotation | ||
| IL_9P7I_234 | 1/S2/942:945, 1/S2/981:984 | No text annotation | ||
| IL_9P7I_235 | 1/S2/952:956, 1/S2/967:974 | No text annotation | ||
| IL_9P7I_236 | 1/S2/1042:1047, 1/S2/1071:1073 | No text annotation | ||
| IL_9P7I_237 | 1/S2/1047:1051, 1/S2/1067:1071 | No text annotation | ||
| IL_9P7I_238 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation | ||
| IL_9P7I_239 | 1/S2/1098:1101, 1/S2/1131:1134 | No text annotation | ||
| IL_9P7I_240 | 1/S2/1101:1103, 1/S2/1129:1131 | No text annotation | ||
| IL_9P7I_241 | 1/S2/1108:1110, 1/S2/1123:1124 | No text annotation | ||
| IL_9P7I_242 | 1/S2/1168:1175, 1/S2/1186:1191 | No text annotation | ||
| IL_9P7I_243 | 1/S2/1203:1204, 1/S2/1694:1696 | No text annotation | ||
| IL_9P7I_244 | 1/S2/1206:1208, 1/S2/1691:1692 | No text annotation | ||
| IL_9P7I_245 | 1/S2/1214:1217, 1/S2/1681:1685 | No text annotation | ||
| IL_9P7I_247 | 1/S2/1235:1236, 1/S2/1521:1523 | No text annotation | ||
| IL_9P7I_248 | 1/S2/1270:1272, 1/S2/1510:1512 | No text annotation | ||
| IL_9P7I_253 | 1/S2/1325:1327, 1/S2/1502:1503 | No text annotation | ||
| IL_9P7I_254 | 1/S2/1329:1333, 1/S2/1498:1500 | No text annotation | ||
| IL_9P7I_255 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation | ||
| IL_9P7I_257 | 1/S2/1337:1338, 1/S2/1488:1490 | No text annotation | ||
| IL_9P7I_258 | 1/S2/1347:1349, 1/S2/1380:1382 | No text annotation | ||
| IL_9P7I_259 | 1/S2/1363:1365, 1/S2/1374:1375 | No text annotation | ||
| IL_9P7I_260 | 1/S2/1395:1399, 1/S2/1447:1450 | No text annotation | ||
| IL_9P7I_264 | 1/S2/1537:1539, 1/S2/1594:1596 | No text annotation | ||
| IL_9P7I_265 | 1/S2/1541:1550, 1/S2/1582:1592 | No text annotation | ||
| IL_9P7I_266 | 1/S2/1550:1558, 1/S2/1577:1582 | No text annotation | ||
| IL_9P7I_269 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | ||
| IL_9P7I_270 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | ||
| IL_9P7I_271 | 1/S2/1706:1708, 1/S2/1826:1828 | No text annotation | ||
| IL_9P7I_272 | 1/S2/1708:1711, 1/S2/1822:1826 | No text annotation | ||
| IL_9P7I_273 | 1/S2/1714:1716, 1/S2/1817:1819 | No text annotation | ||
| IL_9P7I_274 | 1/S2/1717:1720, 1/S2/1813:1816 | No text annotation | ||
| IL_9P7I_275 | 1/S2/1720:1722, 1/S2/1812:1813 | No text annotation | ||
| IL_9P7I_276 | 1/S2/1729:1731, 1/S2/1803:1805 | No text annotation | ||
| IL_9P7I_277 | 1/S2/1733:1736, 1/S2/1798:1801 | No text annotation | ||
| IL_9P7I_278 | 1/S2/1739:1741, 1/S2/1793:1795 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9P7I_001 | No text annotation | ||
| IL_9P7I_010 | No text annotation | ||
| IL_9P7I_011 | No text annotation | ||
| IL_9P7I_012 | No text annotation | ||
| IL_9P7I_013 | No text annotation | ||
| IL_9P7I_021 | No text annotation | ||
| IL_9P7I_022 | No text annotation | ||
| IL_9P7I_025 | No text annotation | ||
| IL_9P7I_027 | No text annotation | ||
| IL_9P7I_028 | No text annotation | ||
| IL_9P7I_029 | No text annotation | ||
| IL_9P7I_030 | No text annotation | ||
| IL_9P7I_032 | No text annotation | ||
| IL_9P7I_037 | No text annotation | ||
| IL_9P7I_038 | No text annotation | ||
| IL_9P7I_041 | No text annotation | ||
| IL_9P7I_042 | No text annotation | ||
| IL_9P7I_043 | No text annotation | ||
| IL_9P7I_044 | No text annotation | ||
| IL_9P7I_045 | No text annotation | ||
| IL_9P7I_046 | No text annotation | ||
| IL_9P7I_047 | No text annotation | ||
| IL_9P7I_048 | No text annotation | ||
| IL_9P7I_053 | No text annotation | ||
| IL_9P7I_054 | No text annotation | ||
| IL_9P7I_079 | No text annotation | ||
| IL_9P7I_088 | No text annotation | ||
| IL_9P7I_089 | No text annotation | ||
| IL_9P7I_098 | No text annotation | ||
| IL_9P7I_099 | No text annotation | ||
| IL_9P7I_108 | No text annotation | ||
| IL_9P7I_118 | No text annotation | ||
| IL_9P7I_163 | No text annotation | ||
| IL_9P7I_164 | No text annotation | ||
| IL_9P7I_165 | No text annotation | ||
| IL_9P7I_167 | No text annotation | ||
| IL_9P7I_170 | No text annotation | ||
| IL_9P7I_186 | No text annotation | ||
| IL_9P7I_189 | No text annotation | ||
| IL_9P7I_195 | No text annotation | ||
| IL_9P7I_200 | No text annotation | ||
| IL_9P7I_204 | No text annotation | ||
| IL_9P7I_211 | No text annotation | ||
| IL_9P7I_213 | No text annotation | ||
| IL_9P7I_214 | No text annotation | ||
| IL_9P7I_215 | No text annotation | ||
| IL_9P7I_216 | No text annotation | ||
| IL_9P7I_229 | No text annotation | ||
| IL_9P7I_246 | No text annotation | ||
| IL_9P7I_249 | No text annotation | ||
| IL_9P7I_250 | No text annotation | ||
| IL_9P7I_251 | No text annotation | ||
| IL_9P7I_252 | No text annotation | ||
| IL_9P7I_256 | No text annotation | ||
| IL_9P7I_261 | No text annotation | ||
| IL_9P7I_262 | No text annotation | ||
| IL_9P7I_263 | No text annotation | ||
| IL_9P7I_267 | No text annotation | ||
| IL_9P7I_268 | No text annotation | ||
| IL_9P7I_279 | No text annotation | ||
| IL_9P7I_280 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9P7I_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation | ||
| J3_9P7I_002 | 1/L5/351:367, 1/L5/374:379, 1/L8/21:24 | No text annotation | ||
| J3_9P7I_003 | 1/L5/380:387, 1/L5/414:415, 1/L8/19:20 | No text annotation | ||
| J3_9P7I_004 | 1/L5/380:390, 1/L5/401:415, 1/L8/19:20 | No text annotation | ||
| J3_9P7I_005 | 1/L5/451:455, 1/L5/701:705, 1/L5/1292:1296 | No text annotation | ||
| J3_9P7I_006 | 1/L5/712:713, 1/L5/955:976, 1/L5/1278:1284 | No text annotation | ||
| J3_9P7I_007 | 1/L5/1531:1537, 1/L5/1622:1624, 1/L5/1640:1643 | No text annotation | ||
| J3_9P7I_008 | 1/L5/1546:1548, 1/L5/1580:1584, 1/L5/1609:1612 | No text annotation | ||
| J3_9P7I_009 | 1/L5/1726:1727, 1/L5/1802:1806, 1/L5/1832:1837 | No text annotation | ||
| J3_9P7I_011 | 1/L5/2087:2110, 1/L5/2252:2257, 1/L5/2261:2270 | No text annotation | ||
| J3_9P7I_012 | 1/L5/2393:2399, 1/L5/2805:2807, 1/L5/2819:2822 | No text annotation | ||
| J3_9P7I_013 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation | ||
| J3_9P7I_014 | 1/L5/2440:2445, 1/L5/2515:2519, 1/L5/2536:2537 | No text annotation | ||
| J3_9P7I_015 | 1/L5/2451:2456, 1/L5/2465:2476, 1/L5/2501:2508 | No text annotation | ||
| J3_9P7I_016 | 1/L5/2551:2555, 1/L5/2572:2575, 1/L5/2757:2767 | No text annotation | ||
| J3_9P7I_017 | 1/L5/2575:2576, 1/L5/2585:2589, 1/L5/2756:2757 | No text annotation | ||
| J3_9P7I_018 | 1/L5/2598:2602, 1/L5/2737:2738, 1/L5/2742:2747 | No text annotation | ||
| J3_9P7I_019 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | No text annotation | ||
| J3_9P7I_020 | 1/L5/4091:4097, 1/L5/4112:4129, 1/L5/4155:4158 | No text annotation | ||
| J3_9P7I_021 | 1/L5/4228:4230, 1/L5/4331:4342, 1/L5/4370:4375 | No text annotation | ||
| J3_9P7I_022 | 1/L5/4241:4243, 1/L5/4267:4269, 1/L5/4278:4283 | No text annotation | ||
| J3_9P7I_023 | 1/L5/4463:4466, 1/L5/4491:4493, 1/L5/4507:4513 | No text annotation | ||
| J3_9P7I_024 | 1/L5/4751:4754, 1/L5/4879:4883, 1/L5/4936:4948 | No text annotation | ||
| J3_9P7I_025 | 1/L5/4970:4972, 1/L5/4986:4991, 1/L5/5060:5063 | No text annotation | ||
| J3_9P7I_026 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | geometric J3_8QYX_024 J3_26985.1 | |
| J3_9P7I_027 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | ||
| J3_9P7I_028 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | ||
| J3_9P7I_029 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation | ||
| J3_9P7I_030 | 1/S2/682:685, 1/S2/917:923, 1/S2/1019:1023 | No text annotation | ||
| J3_9P7I_031 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation | ||
| J3_9P7I_032 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | ||
| J3_9P7I_033 | 1/S2/1094:1096, 1/S2/1136:1140, 1/S2/1147:1151 | No text annotation | ||
| J3_9P7I_034 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation | ||
| J3_9P7I_035 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation | ||
| J3_9P7I_036 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation | ||
| J3_9P7I_037 | 1/S2/1272:1277, 1/S2/1320:1324, 1/S2/1504:1510 | No text annotation | ||
| J3_9P7I_038 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | ||
| J3_9P7I_039 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | ||
| J3_9P7I_040 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_9P7I_041 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation | ||
| J4_9P7I_002 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation | ||
| J4_9P7I_003 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | ||
| J4_9P7I_004 | 1/L5/981:983, 1/L5/1070:1072, 1/L5/1240:1243, 1/L5/1268:1273 | No text annotation | ||
| J4_9P7I_005 | 1/L5/2365:2371, 1/L5/2389:2391, 1/L5/2824:2829, 1/L5/3856:3857 | No text annotation | ||
| J4_9P7I_006 | 1/L5/2406:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2784 | No text annotation | ||
| J4_9P7I_007 | 1/L5/2451:2456, 1/L5/2465:2469, 1/L5/2471:2476, 1/L5/2501:2508 | No text annotation | ||
| J4_9P7I_008 | 1/L5/2618:2619, 1/L5/2637:2642, 1/L5/2692:2698, 1/L5/2718:2719 | No text annotation | ||
| J4_9P7I_009 | 1/L5/3634:3638, 1/L5/3650:3654, 1/L5/3690:3694, 1/L5/3821:3826 | No text annotation | ||
| J4_9P7I_010 | 1/L5/3696:3698, 1/L5/3752:3753, 1/L5/3771:3780, 1/L5/3814:3819 | No text annotation | ||
| J4_9P7I_011 | 1/L5/4231:4235, 1/L5/4289:4291, 1/L5/4318:4319, 1/L5/4328:4330 | No text annotation | ||
| J4_9P7I_012 | 1/L5/4587:4590, 1/L5/4620:4621, 1/L5/4676:4678, 1/L5/4712:4715 | No text annotation | ||
| J4_9P7I_013 | 1/Pt/7:10, 1/Pt/25:27, 1/Pt/43:49, 1/Pt/65:66 | tRNA junction | homologous J4_3WQY_001 J4_95067.1 | |
| J4_9P7I_014 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | ||
| J4_9P7I_015 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | ||
| J4_9P7I_016 | 1/S2/685:747, 1/S2/795:800, 1/S2/865:874, 1/S2/912:917 | No text annotation | ||
| J5_9P7I_001 | 1/L5/19:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:138 | No text annotation | ||
| J5_9P7I_002 | 1/L5/1335:1340, 1/L5/1516:1519, 1/L5/1658:1661, 1/L5/2288:2290, 1/L5/2345:2351 | No text annotation | ||
| J5_9P7I_003 | 1/L5/2855:2863, 1/L5/2887:2888, 1/L5/3613:3614, 1/L5/3618:3626, 1/L5/3835:3837 | No text annotation | ||
| J5_9P7I_004 | 1/L5/3902:3910, 1/L5/4392:4400, 1/L5/4444:4453, 1/L5/4528:4534, 1/L5/4552:4558 | No text annotation | ||
| J5_9P7I_005 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4228, 1/L5/4375:4381 | No text annotation | ||
| J5_9P7I_006 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:563, 1/S2/592:595, 1/S2/641:644 | No text annotation | ||
| J5_9P7I_007 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:565, 1/S2/585:595, 1/S2/641:644 | No text annotation | ||
| J5_9P7I_008 | 1/S2/53:56, 1/S2/89:96, 1/S2/434:436, 1/S2/457:459, 1/S2/470:474 | No text annotation | ||
| J5_9P7I_009 | 1/S2/125:129, 1/S2/183:185, 1/S2/214:215, 1/S2/310:312, 1/S2/337:338 | No text annotation | ||
| J6_9P7I_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/332:339, 1/L8/33:35 | No text annotation | ||
| J6_9P7I_002 | 1/L5/1352:1355, 1/L5/1384:1388, 1/L5/1395:1399, 1/L5/1418:1421, 1/L5/1464:1466, 1/L5/1499:1504 | No text annotation | ||
| J6_9P7I_003 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4230, 1/L5/4331:4342, 1/L5/4370:4381 | No text annotation | ||
| J7_9P7I_001 | 1/L5/1666:1671, 1/L5/1684:1685, 1/L5/1852:1855, 1/L5/1879:1884, 1/L5/1895:1899, 1/L5/2077:2078, 1/L5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9P7I_010 | No text annotation | ||
| J4_9P7I_001 | tRNA junction | ||
| J4_9P7I_017 | tRNA junction |
Coloring options: