IL_9P7J_249

3D structure

PDB id

9P7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7J_249 not in the Motif Atlas

Homologous match to IL_9PN5_211

Geometric discrepancy: 0.2025

The information below is about IL_9PN5_211

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9P7J|1|S2|C|1363
9P7J|1|S2|U|1364
9P7J|1|S2|G|1365
*
9P7J|1|S2|C|1374
9P7J|1|S2|G|1375

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SR

Small ribosomal subunit protein eS17

Chain Sa

40S ribosomal protein S26