IL_9P7W_041

3D structure

PDB id

9P7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGAC*GGUCG

Length

9 nucleotides

Bulged bases

9P7W|1|L5|C|1202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7W_041 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.1868

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9P7W|1|L5|C|1093
9P7W|1|L5|G|1094
9P7W|1|L5|A|1095
9P7W|1|L5|C|1096
*
9P7W|1|L5|G|1199
9P7W|1|L5|G|1200
9P7W|1|L5|U|1201
9P7W|1|L5|C|1202
9P7W|1|L5|G|1203

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21