IL_9P7W_183

3D structure

PDB id

9P7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

G(PSU)U*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7W_183 not in the Motif Atlas

Geometric match to IL_4ZC7_004

Geometric discrepancy: 0.1522

The information below is about IL_4ZC7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9P7W|1|S2|G|108
9P7W|1|S2|PSU|109
9P7W|1|S2|U|110
*
9P7W|1|S2|G|351
9P7W|1|S2|U|352
9P7W|1|S2|C|353

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11