IL_9P7W_201

3D structure

PDB id

9P7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CAU*(A2M)AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7W_201 not in the Motif Atlas

Homologous match to IL_9PN5_163

Geometric discrepancy: 0.1478

The information below is about IL_9PN5_163

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_19025.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9P7W|1|S2|C|459
9P7W|1|S2|A|460
9P7W|1|S2|U|461
*
9P7W|1|S2|A2M|468
9P7W|1|S2|A|469
9P7W|1|S2|G|470

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6