IL_9P7X_024

3D structure

PDB id

9P7X (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

9P7X|1|L5|G|483

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P7X_024 not in the Motif Atlas

Geometric match to IL_7A0S_067

Geometric discrepancy: 0.3667

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9P7X|1|L5|G|482
9P7X|1|L5|G|483
9P7X|1|L5|U|484
9P7X|1|L5|C|485
*
9P7X|1|L5|G|671
9P7X|1|L5|C|672

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lr

60S ribosomal protein L28