IL_9P7X_200

3D structure

PDB id

9P7X (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9P7X|1|S2|U|361, 9P7X|1|S2|C|399, 9P7X|1|S2|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7X|1|S2|U|359
9P7X|1|S2|A|360
9P7X|1|S2|U|361
9P7X|1|S2|C|362
9P7X|1|S2|A|363
9P7X|1|S2|A|364
*
9P7X|1|S2|U|396
9P7X|1|S2|G|397
9P7X|1|S2|A|398
9P7X|1|S2|C|399
9P7X|1|S2|C|400
9P7X|1|S2|A|401
9P7X|1|S2|C|402
9P7X|1|S2|G|403

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11

Chain SX

40S ribosomal protein S23