IL_9P8B_211

3D structure

PDB id

9P8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF1A-A/T-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

AAU*AAUU

Length

7 nucleotides

Bulged bases

9P8B|1|S2|U|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P8B_211 not in the Motif Atlas

Geometric match to IL_8K85_007

Geometric discrepancy: 0.1555

The information below is about IL_8K85_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9P8B|1|S2|A|528
9P8B|1|S2|A|529
9P8B|1|S2|U|530
*
9P8B|1|S2|A|554
9P8B|1|S2|A|555
9P8B|1|S2|U|556
9P8B|1|S2|U|557

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain Se

Small ribosomal subunit protein eS30