IL_9P8B_239

3D structure

PDB id

9P8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF1A-A/T-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P8B_239 not in the Motif Atlas

Geometric match to IL_8GLP_246

Geometric discrepancy: 0.0693

The information below is about IL_8GLP_246

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_26092.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9P8B|1|S2|G|1108
9P8B|1|S2|C|1109
9P8B|1|S2|G|1110
*
9P8B|1|S2|C|1123
9P8B|1|S2|C|1124

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SB

40S ribosomal protein S3a

Chain SR

Small ribosomal subunit protein eS17

Chain Sb

Small ribosomal subunit protein eS27