IL_9P8H_046

3D structure

PDB id

9P8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UCG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P8H_046 not in the Motif Atlas

Geometric match to IL_4R4V_001

Geometric discrepancy: 0.3066

The information below is about IL_4R4V_001

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9P8H|1|L5|U|1100
9P8H|1|L5|C|1167
9P8H|1|L5|G|1168
*
9P8H|1|L5|C|1193
9P8H|1|L5|G|1194

Current chains

Chain L5

28S rRNA

Nearby chains