IL_9P8H_124
3D structure
- PDB id
- 9P8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG
- Length
- 16 nucleotides
- Bulged bases
- 9P8H|1|L5|A2M|3785, 9P8H|1|L5|C|3791, 9P8H|1|L5|C|3810
- QA status
- Modified nucleotides: 5MC, A2M, OMG, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9P8H_124 not in the Motif Atlas
- Homologous match to IL_9AXU_084
- Geometric discrepancy: 0.0818
- The information below is about IL_9AXU_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.4
- Basepair signature
- cWW-L-tHH-cHW-cWW-L-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
9P8H|1|L5|C|3781
9P8H|1|L5|5MC|3782
9P8H|1|L5|A|3783
9P8H|1|L5|A|3784
9P8H|1|L5|A2M|3785
9P8H|1|L5|U|3786
9P8H|1|L5|G|3787
9P8H|1|L5|C|3788
9P8H|1|L5|C|3789
9P8H|1|L5|U|3790
9P8H|1|L5|C|3791
9P8H|1|L5|OMG|3792
*
9P8H|1|L5|OMC|3808
9P8H|1|L5|G|3809
9P8H|1|L5|C|3810
9P8H|1|L5|G|3811
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain AP
- Transfer RNA; tRNA
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: