IL_9P8I_012

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

GCUCGUGG*CGGC

Length

12 nucleotides

Bulged bases

9P8I|1|L5|C|183, 9P8I|1|L5|C|185, 9P8I|1|L5|G|188

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|L5|G|182
9P8I|1|L5|C|183
9P8I|1|L5|U|184
9P8I|1|L5|C|185
9P8I|1|L5|G|186
9P8I|1|L5|U|187
9P8I|1|L5|G|188
9P8I|1|L5|G|189
*
9P8I|1|L5|C|252
9P8I|1|L5|G|253
9P8I|1|L5|G|254
9P8I|1|L5|C|255

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LL

Large ribosomal subunit protein eL13

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37