IL_9P8I_017

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

9P8I|1|L5|G|409, 9P8I|1|L5|G|413

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|L5|G|387
9P8I|1|L5|A|388
9P8I|1|L5|A|389
9P8I|1|L5|C|390
*
9P8I|1|L5|G|401
9P8I|1|L5|A|402
9P8I|1|L5|G|403
9P8I|1|L5|U|404
9P8I|1|L5|U|405
9P8I|1|L5|C|406
9P8I|1|L5|A|407
9P8I|1|L5|A|408
9P8I|1|L5|G|409
9P8I|1|L5|A|410
9P8I|1|L5|G|411
9P8I|1|L5|G|412
9P8I|1|L5|G|413
9P8I|1|L5|C|414

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LP

60S ribosomal protein L17

Chain LY

60S ribosomal protein L26

Chain Ll

60S ribosomal protein L39