IL_9P8I_029

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

9P8I|1|L5|C|501, 9P8I|1|L5|C|502, 9P8I|1|L5|C|503, 9P8I|1|L5|G|504

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9P8I_029 not in the Motif Atlas

Geometric match to IL_6IV9_001

Geometric discrepancy: 0.3121

The information below is about IL_6IV9_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9P8I|1|L5|G|500
9P8I|1|L5|C|501
9P8I|1|L5|C|502
9P8I|1|L5|C|503
9P8I|1|L5|G|504
9P8I|1|L5|G|505
*
9P8I|1|L5|U|653
9P8I|1|L5|C|654

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18