IL_9P8I_060

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

(OMG)A(A2M)AG*CUAGUAGC

Length

13 nucleotides

Bulged bases

9P8I|1|L5|A|1650, 9P8I|1|L5|G|1654

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|L5|OMG|1522
9P8I|1|L5|A|1523
9P8I|1|L5|A2M|1524
9P8I|1|L5|A|1525
9P8I|1|L5|G|1526
*
9P8I|1|L5|C|1648
9P8I|1|L5|U|1649
9P8I|1|L5|A|1650
9P8I|1|L5|G|1651
9P8I|1|L5|U|1652
9P8I|1|L5|A|1653
9P8I|1|L5|G|1654
9P8I|1|L5|C|1655

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

Large ribosomal subunit protein eL13

Chain LN

60S ribosomal protein L15

Chain La

60S ribosomal protein L27a

Chain Lj

60S ribosomal protein L37