IL_9P8I_127

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9P8I|1|L5|A2M|3785, 9P8I|1|L5|C|3791, 9P8I|1|L5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|L5|C|3781
9P8I|1|L5|5MC|3782
9P8I|1|L5|A|3783
9P8I|1|L5|A|3784
9P8I|1|L5|A2M|3785
9P8I|1|L5|U|3786
9P8I|1|L5|G|3787
9P8I|1|L5|C|3788
9P8I|1|L5|C|3789
9P8I|1|L5|U|3790
9P8I|1|L5|C|3791
9P8I|1|L5|OMG|3792
*
9P8I|1|L5|OMC|3808
9P8I|1|L5|G|3809
9P8I|1|L5|C|3810
9P8I|1|L5|G|3811

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA