IL_9P8I_226

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

GAAAAAA(PSU)U*ACCGCAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|S2|G|807
9P8I|1|S2|A|808
9P8I|1|S2|A|809
9P8I|1|S2|A|810
9P8I|1|S2|A|811
9P8I|1|S2|A|812
9P8I|1|S2|A|813
9P8I|1|S2|PSU|814
9P8I|1|S2|U|815
*
9P8I|1|S2|A|849
9P8I|1|S2|C|850
9P8I|1|S2|C|851
9P8I|1|S2|G|852
9P8I|1|S2|C|853
9P8I|1|S2|A|854
9P8I|1|S2|G|855
9P8I|1|S2|C|856

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SL

40S ribosomal protein S11

Chain SW

40S ribosomal protein S15a