IL_9P9K_081

3D structure

PDB id

9P9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with EIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9P9K|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P9K|1|L5|U|1957
9P9K|1|L5|A|1958
9P9K|1|L5|U|1959
9P9K|1|L5|A|1960
9P9K|1|L5|G|1961
9P9K|1|L5|A|1962
9P9K|1|L5|C|1963
9P9K|1|L5|A|1964
9P9K|1|L5|G|1965
*
9P9K|1|L5|C|2022
9P9K|1|L5|C|2023
9P9K|1|L5|G|2024
9P9K|1|L5|A|2025
9P9K|1|L5|A|2026

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lm

Large ribosomal subunit protein eL40