IL_9P9K_101

3D structure

PDB id

9P9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with EIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGGAAUG*CGAGAGA

Length

14 nucleotides

Bulged bases

9P9K|1|L5|U|2661, 9P9K|1|L5|A|2674

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P9K|1|L5|U|2656
9P9K|1|L5|G|2657
9P9K|1|L5|G|2658
9P9K|1|L5|A|2659
9P9K|1|L5|A|2660
9P9K|1|L5|U|2661
9P9K|1|L5|G|2662
*
9P9K|1|L5|C|2672
9P9K|1|L5|G|2673
9P9K|1|L5|A|2674
9P9K|1|L5|G|2675
9P9K|1|L5|A|2676
9P9K|1|L5|G|2677
9P9K|1|L5|A|2678

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LZ

60S ribosomal protein L27

Chain Lc

60S ribosomal protein L30

Chain Lp

60S ribosomal protein L37a