Motif IL_93476.4 Version IL_93476.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-7 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8OI5_075 | 8OI5 | 0.1317 | 2 | 1 | LSU rRNA | U | 1707 | G | 1708 | G | 1709 | A | 1710 | A | 1711 | U | 1713 | * | G | 1723 | G | 1724 | G | 1726 | A | 1727 | U | 1728 | G | 1729 | cWW | tSH | tSs | ntHS | cWW | |||
| 2 | IL_9SUM_067 | 9SUM | 0.1070 | 2 | A | LSU rRNA | U | 1651 | G | 1652 | G | 1653 | A | 1654 | A | 1655 | U | 1657 | * | G | 1667 | G | 1668 | G | 1670 | A | 1671 | U | 1672 | G | 1673 | cWW | tSH | ntSH | tSs | tHS | cWW | ||
| 3 | IL_9PN5_071 | 9PN5 | 0.0838 | 2 | A1 | LSU rRNA | C | 1711 | G | 1712 | G | 1713 | A | 1714 | A | 1715 | U | 1717 | * | G | 1727 | G | 1728 | G | 1730 | A | 1731 | U | 1732 | G | 1733 | cWW | tSH | tSs | tHS | cWW | |||
| 4 | IL_9H3G_082 | 9H3G | 0.0000 | 2 | A | LSU rRNA | U | 1712 | G | 1713 | G | 1714 | A | 1715 | A | 1716 | C | 1718 | * | G | 1728 | G | 1729 | G | 1731 | G | 1732 | U | 1733 | A | 1734 | cWW | tSH | tSs | tHS | cWW | |||
| 5 | IL_9AXU_069 | 9AXU | 0.0775 | 2 | 2 | LSU rRNA | U | 1751 | G | 1752 | A | 1753 | A | 1754 | A | 1755 | C | 1757 | * | G | 1767 | G | 1768 | G | 1770 | C | 1771 | U | 1772 | A | 1773 | cWW | tSH | tSs | tHS | cWW | |||
| 6 | IL_8GLP_101 | 8GLP | 0.1007 | 2 | Kink-turn (H) | L5 | LSU rRNA | U | 2656 | G | 2657 | G | 2658 | A | 2659 | A | 2660 | G | 2662 | * | C | 2672 | G | 2673 | G | 2675 | A | 2676 | G | 2677 | A | 2678 | cWW | tSH | ntSH | tSs | tHS | cWW | |
| 7 | IL_9E6Q_060 | 9E6Q | 0.3757 | 2 | 1 | LSU rRNA | G | 1630 | G | 1631 | G | 1632 | A | 1633 | G | 1634 | G | 1636 | * | C | 1646 | G | 1647 | G | 1649 | A | 1650 | A | 1651 | C | 1652 | cWW | tSH | ntSH | tSs | tHS | tHW | cWW | |
| 8 | IL_9L6X_002 | 9L6X | 0.4800 | 2 | D | CS1 RNA | C | 6 | A | 7 | G | 8 | A | 9 | G | 10 | A | 12 | * | U | 25 | G | 26 | G | 28 | A | 29 | G | 30 | G | 31 | cWW | tSH | tSs | tHS | tHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGAAUU*GGAGAUG | 2 |
| CGGAAUU*GGAGAUG | 1 |
| UGGAAAC*GGAGGUA | 1 |
| UGAAAUC*GGAGCUA | 1 |
| UGGAAUG*CGAGAGA | 1 |
| GGGAGUG*CGAGAAC | 1 |
| CAGAGAA*UGUGAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAAU*GAGAU | 3 |
| GGAAA*GAGGU | 1 |
| GAAAU*GAGCU | 1 |
| GGAAU*GAGAG | 1 |
| GGAGU*GAGAA | 1 |
| AGAGA*GUGAG | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Kink-turn (H) (1)
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Heat map statistics
- Min 0.08 | Avg 0.22 | Max 0.50
Coloring options: