IL_9PA7_090

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PA7_090 not in the Motif Atlas

Homologous match to IL_8GLP_300

Geometric discrepancy: 0.0393

The information below is about IL_8GLP_300

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9PA7|1|L5|G|2358
9PA7|1|L5|U|2359
9PA7|1|L5|A|2360
9PA7|1|L5|G|2361
9PA7|1|L5|U|2362
9PA7|1|L5|A2M|2363
9PA7|1|L5|OMG|2364
*
9PA7|1|L5|C|3858
9PA7|1|L5|G|3859
9PA7|1|L5|A|3860
9PA7|1|L5|A|3861
9PA7|1|L5|A|3862
9PA7|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17