IL_9PA7_193

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

9PA7|1|S2|OMU|172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|S2|G|145
9PA7|1|S2|G|146
9PA7|1|S2|A|147
9PA7|1|S2|U|148
9PA7|1|S2|A|149
9PA7|1|S2|A|150
9PA7|1|S2|C|151
*
9PA7|1|S2|G|167
9PA7|1|S2|C|168
9PA7|1|S2|U|169
9PA7|1|S2|A|170
9PA7|1|S2|A|171
9PA7|1|S2|OMU|172
9PA7|1|S2|A|173
9PA7|1|S2|OMC|174

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

Ribosomal protein L24

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24