IL_9PBE_092

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

9PBE|1|L5|C|2478

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PBE_092 not in the Motif Atlas

Homologous match to IL_8GLP_092

Geometric discrepancy: 0.4298

The information below is about IL_8GLP_092

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9PBE|1|L5|A|2477
9PBE|1|L5|C|2478
9PBE|1|L5|G|2479
*
9PBE|1|L5|C|2499
9PBE|1|L5|U|2500

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LX

60S ribosomal protein L23a