IL_9PBE_149

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|C|4596
9PBE|1|L5|U|4597
9PBE|1|L5|C|4598
9PBE|1|L5|A|4599
9PBE|1|L5|G|4600
9PBE|1|L5|U|4601
9PBE|1|L5|A|4602
9PBE|1|L5|C|4603
*
9PBE|1|L5|G|4608
9PBE|1|L5|G|4609
9PBE|1|L5|A|4610
9PBE|1|L5|A|4611
9PBE|1|L5|C|4612
9PBE|1|L5|C|4613
9PBE|1|L5|G|4614

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LH

60S ribosomal protein L9

Chain LV

60S ribosomal protein L23

Chain Lm

Large ribosomal subunit protein eL40