IL_9PGI_058
3D structure
- PDB id
- 9PGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the A-P-E state with TACO1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CCCUGUAC*GGACAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PGI_058 not in the Motif Atlas
- Geometric match to IL_9AXU_109
- Geometric discrepancy: 0.1661
- The information below is about IL_9AXU_109
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9PGI|1|A|C|3119
9PGI|1|A|C|3120
9PGI|1|A|C|3121
9PGI|1|A|U|3122
9PGI|1|A|G|3123
9PGI|1|A|U|3124
9PGI|1|A|A|3125
9PGI|1|A|C|3126
*
9PGI|1|A|G|3131
9PGI|1|A|G|3132
9PGI|1|A|A|3133
9PGI|1|A|C|3134
9PGI|1|A|A|3135
9PGI|1|A|A|3136
9PGI|1|A|G|3137
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain C
- Translational activator of cytochrome c oxidase 1
- Chain L
- 39S ribosomal protein L14, mitochondrial
Coloring options: