IL_9PGM_021
3D structure
- PDB id
- 9PGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PGM_021 not in the Motif Atlas
- Homologous match to IL_7A0S_045
- Geometric discrepancy: 0.1619
- The information below is about IL_7A0S_045
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9PGM|1|A|A|2306
9PGM|1|A|U|2307
9PGM|1|A|A|2308
9PGM|1|A|A|2309
9PGM|1|A|G|2310
9PGM|1|A|U|2311
9PGM|1|A|A|2312
9PGM|1|A|A|2313
*
9PGM|1|A|U|2674
9PGM|1|A|G|2675
9PGM|1|A|A|2676
9PGM|1|A|A|2677
9PGM|1|A|A|2678
9PGM|1|A|U|2679
9PGM|1|A|U|2680
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 0
- 39S ribosomal protein L32, mitochondrial
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain R
- 39S ribosomal protein L20, mitochondrial
- Chain T
- 39S ribosomal protein L22, mitochondrial
Coloring options: