IL_9PGM_058

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PGM_058 not in the Motif Atlas

Geometric match to IL_9AXU_109

Geometric discrepancy: 0.1651

The information below is about IL_9AXU_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9PGM|1|A|C|3119
9PGM|1|A|C|3120
9PGM|1|A|C|3121
9PGM|1|A|U|3122
9PGM|1|A|G|3123
9PGM|1|A|U|3124
9PGM|1|A|A|3125
9PGM|1|A|C|3126
*
9PGM|1|A|G|3131
9PGM|1|A|G|3132
9PGM|1|A|A|3133
9PGM|1|A|C|3134
9PGM|1|A|A|3135
9PGM|1|A|A|3136
9PGM|1|A|G|3137

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain L

39S ribosomal protein L14, mitochondrial