IL_9PGM_091

3D structure

PDB id

9PGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PGM_091 not in the Motif Atlas

Geometric match to IL_5ML7_009

Geometric discrepancy: 0.1874

The information below is about IL_5ML7_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

9PGM|1|AA|U|1208
9PGM|1|AA|C|1209
*
9PGM|1|AA|G|1355
9PGM|1|AA|A|1356
9PGM|1|AA|A|1357

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain Ax

P/P-tRNA