IL_9PIH_040

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9PIH|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PIH_040 not in the Motif Atlas

Homologous match to IL_6CZR_410

Geometric discrepancy: 0.1973

The information below is about IL_6CZR_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

9PIH|1|A|G|933
9PIH|1|A|C|934
9PIH|1|A|A|935
*
9PIH|1|A|U|1380
9PIH|1|A|U|1381
9PIH|1|A|C|1382
9PIH|1|A|C|1383
9PIH|1|A|C|1384

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain I

Small ribosomal subunit protein uS9

Chain Z

Transfer RNA; tRNA