IL_9PIH_071
3D structure
- PDB id
- 9PIH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CCAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PIH_071 not in the Motif Atlas
- Geometric match to IL_8B0X_071
- Geometric discrepancy: 0.0399
- The information below is about IL_8B0X_071
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
9PIH|1|a|C|239
9PIH|1|a|C|240
9PIH|1|a|A|241
9PIH|1|a|G|242
9PIH|1|a|U|243
9PIH|1|a|A|244
9PIH|1|a|G|245
*
9PIH|1|a|C|253
9PIH|1|a|G|254
9PIH|1|a|A|255
9PIH|1|a|A|256
9PIH|1|a|C|257
9PIH|1|a|G|258
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L35
- Chain k
- Large ribosomal subunit protein uL15
Coloring options: